Crankshaft Pulley Alignment
 

I am having a problem aligning the bottom crankshaft pulley. Its the pulley for the drive belt. Its below the water pump and alternator. I have a 1995 Eclipse, automatic, Non-turbo. The previous owner tried disconnecting the stock alarm himself and cut wires that didn't belong to the alarm. Somehow it affected the ECU and I think the car anti-theft itself. So what I need to know, is there any way that I can reprogram or disalarm the car myself? Any suggestions would help and I would be so grateful for them. Thanks!